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Contrasting role of ASCC3 and ALKBH3 in determining genomic alterations in Glioblastoma Multiforme

Sriram et al. | Sep 27, 2022

Contrasting role of <i>ASCC3</i> and <i>ALKBH3</i> in determining genomic alterations in Glioblastoma Multiforme

Glioblastoma Multiforme (GBM) is the most malignant brain tumor with the highest fraction of genome alterations (FGA), manifesting poor disease-free status (DFS) and overall survival (OS). We explored The Cancer Genome Atlas (TCGA) and cBioportal public dataset- Firehose legacy GBM to study DNA repair genes Activating Signal Cointegrator 1 Complex Subunit 3 (ASCC3) and Alpha-Ketoglutarate-Dependent Dioxygenase AlkB Homolog 3 (ALKBH3). To test our hypothesis that these genes have correlations with FGA and can better determine prognosis and survival, we sorted the dataset to arrive at 254 patients. Analyzing using RStudio, both ASCC3 and ALKBH3 demonstrated hypomethylation in 82.3% and 61.8% of patients, respectively. Interestingly, low mRNA expression was observed in both these genes. We further conducted correlation tests between both methylation and mRNA expression of these genes with FGA. ASCC3 was found to be negatively correlated, while ALKBH3 was found to be positively correlated, potentially indicating contrasting dysregulation of these two genes. Prognostic analysis showed the following: ASCC3 hypomethylation is significant with DFS and high ASCC3 mRNA expression to be significant with OS, demonstrating ASCC3’s potential as disease prediction marker.

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The effect of lead oxide concentrations on the bioluminescence intensity of Panellus stipticus

Park et al. | Mar 02, 2026

The effect of lead oxide concentrations on the bioluminescence intensity of <i>Panellus stipticus</i>

Here the authors investigate the potential of the bioluminescent fungus Panellus stipticus to serve as a sustainable bioindicator for environmental lead contamination. Their findings demonstrate that higher lead concentrations cause a measurable decrease in fungal bioluminescence intensity over time suggesting that the fungus could be an effective tool for detecting lead in an environment.

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Deep learning for pulsar detection: Investigating hyperparameter effects on TensorFlow classification accuracy

Upadhyay et al. | Jan 31, 2026

Deep learning for pulsar detection: Investigating hyperparameter effects on TensorFlow classification accuracy

This study investigates how the hyperparameters epochs and batch size affect the classification accuracy of a convolutional neural network (CNN) trained on pulsar candidate data. Our results reveal that accuracy improves with increasing number of epochs and smaller batch sizes, suggesting that with optimized hyperparameters, high accuracy may be achievable with minimal training. These findings offer insights that could help create more efficient machine learning classification models for pulsar signal detection, with the potential of accelerating pulsar discovery and advancing astrophysical research.

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Tree-Based Learning Algorithms to Classify ECG with Arrhythmias

Sun et al. | Apr 23, 2025

Tree-Based Learning Algorithms to Classify ECG with Arrhythmias

Arrhythmias vary in type and treatment, and ECGs are used to detect them, though human interpretation can be inconsistent. The researchers tested four tree-based algorithms (gradient boosting, random forest, decision tree, and extra trees) on ECG data from over 10,000 patients.

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A novel approach for predicting Alzheimer’s disease using machine learning on DNA methylation in blood

Adami et al. | Sep 20, 2023

A novel approach for predicting Alzheimer’s disease using machine learning on DNA methylation in blood
Image credit: National Cancer Institute

Here, recognizing the difficulty associated with tracking the progression of dementia, the authors used machine learning models to predict between the presence of cognitive normalcy, mild cognitive impairment, and Alzheimer's Disease, based on blood DNA methylation levels, sex, and age. With four machine learning models and two dataset dimensionality reduction methods they achieved an accuracy of 53.33%.

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