We know relatively little about how vegan diets and non-vegan diets compare when it comes to the gut microbiome. Gollamudi and Gollamudi tackle this challenge by investigating how changes in a participant's diet affected the diversity of their intestinal microbiome.
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Applying centrality analysis on a protein interaction network to predict colorectal cancer driver genes
In this article the authors created an interaction map of proteins involved in colorectal cancer to look for driver vs. non-driver genes. That is they wanted to see if they could determine what genes are more likely to drive the development and progression in colorectal cancer and which are present in altered states but not necessarily driving disease progression.
Read More...Heterotrophic culture of Spirulina platensis improved its growth and the study of its nutritional effect
The authors looked at the ability to grow S. platensis on a larger scale with reduced cost given that it is currently quite expensive to grow, but poses as an important food source in the future.
Read More...Entropy-based subset selection principal component analysis for diabetes risk factor identification
In this article, the authors looked at developing a strategy that would allow for earlier diagnosis of Diabetes as that improves long-term outcomes. They were able to find that BMI, tricep skin fold thickness, and blood pressure are the risk factors with the highest accuracy in predicting diabetes risk.
Read More...Antibacterial activity by Dombeya wallichii plant extracts obtained by ultrasound-assisted extraction
Medicinal plants could be a good source of medication to combat antibiotic resistance. Dombeya wallichii, which is commonly called Pink Ball Tree in the family Sterculiaceae, has been documented to have medicinal potential. We observed the highest antibacterial activity in the stem extracts, followed by leaf and bark extracts. The extracts were more effective against tested Gram-positive bacteria when compared with Gram-negative strains.
Read More...Analysis of Milorganite’s ability to sustain growth of Ocimum basilicum in simulated Martian soil
The authors test whether basil can grow in a simulated Martian soil improved with a waste-based fertilizer called Milorganite.
Read More...A new scale of mathematical problem complexity and its application to understanding fear of mathematics
Fear of mathematics is a widespread phenomenon. Pandey and Pandey investigate what this fear has to do with the place of mathematics in a school curriculum, by developing a method for comparing mathematical problem complexity to the complexity of English literature coursework.
Read More...Aberrant response to dexamethasone suppression test associated with inflammatory response in MDD patients
Major depressive disorder (MDD) is a prevalent mood disorder. The direct causes and biological mechanisms of depression still elude understanding, though genetic factors have been implicated. This study looked to identify the mechanism behind the aberrant response to the dexamethasone suppression test (DST) displayed by MDD patients, in which they display a lack of cortisol suppression. Analysis revealed several pro-inflammatory genes that were significant and differentially expressed between affected and non-affected groups in response to the DST. Looking at ways to decrease the inflammatory response could have implications for treatment and may explain why some people treated for depression still display symptoms or may lead researchers to different classes of drugs for treatment.
Read More...Income mobility and government spending in the United States
Recent research suggests that the "American Dream" of income mobility may be becoming increasingly hard to obtain. Datta and Schmitz explore the role of government spending in socioeconomic opportunity by determining which state government spending components are associated with increased income mobility.
Read More...Recognition of animal body parts via supervised learning
The application of machine learning techniques has facilitated the automatic annotation of behavior in video sequences, offering a promising approach for ethological studies by reducing the manual effort required for annotating each video frame. Nevertheless, before solely relying on machine-generated annotations, it is essential to evaluate the accuracy of these annotations to ensure their reliability and applicability. While it is conventionally accepted that there cannot be a perfect annotation, the degree of error associated with machine-generated annotations should be commensurate with the error between different human annotators. We hypothesized that machine learning supervised with adequate human annotations would be able to accurately predict body parts from video sequences. Here, we conducted a comparative analysis of the quality of annotations generated by humans and machines for the body parts of sheep during treadmill walking. For human annotation, two annotators manually labeled six body parts of sheep in 300 frames. To generate machine annotations, we employed the state-of-the-art pose-estimating library, DeepLabCut, which was trained using the frames annotated by human annotators. As expected, the human annotations demonstrated high consistency between annotators. Notably, the machine learning algorithm also generated accurate predictions, with errors comparable to those between humans. We also observed that abnormal annotations with a high error could be revised by introducing Kalman Filtering, which interpolates the trajectory of body parts over the time series, enhancing robustness. Our results suggest that conventional transfer learning methods can generate behavior annotations as accurate as those made by humans, presenting great potential for further research.
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