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Using explainable artificial intelligence to identify patient-specific breast cancer subtypes

Suresh et al. | Jan 12, 2024

Using explainable artificial intelligence to identify patient-specific breast cancer subtypes

Breast cancer is the most common cancer in women, with approximately 300,000 diagnosed with breast cancer in 2023. It ranks second in cancer-related deaths for women, after lung cancer with nearly 50,000 deaths. Scientists have identified important genetic mutations in genes like BRCA1 and BRCA2 that lead to the development of breast cancer, but previous studies were limited as they focused on specific populations. To overcome limitations, diverse populations and powerful statistical methods like genome-wide association studies and whole-genome sequencing are needed. Explainable artificial intelligence (XAI) can be used in oncology and breast cancer research to overcome these limitations of specificity as it can analyze datasets of diagnosed patients by providing interpretable explanations for identified patterns and predictions. This project aims to achieve technological and medicinal goals by using advanced algorithms to identify breast cancer subtypes for faster diagnoses. Multiple methods were utilized to develop an efficient algorithm. We hypothesized that an XAI approach would be best as it can assign scores to genes, specifically with a 90% success rate. To test that, we ran multiple trials utilizing XAI methods through the identification of class-specific and patient-specific key genes. We found that the study demonstrated a pipeline that combines multiple XAI techniques to identify potential biomarker genes for breast cancer with a 95% success rate.

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Attitudes towards mental health in Indians who practice yoga regularly and those who do not

Komar et al. | Jul 13, 2022

Attitudes towards mental health in Indians who practice yoga regularly and those who do not

Whether it is through implicit association or intentional practice, yoga has been known to help individuals maintain good mental health. However, many communities, such as South Asian communities, often project the stereotype that embodies neglecting topics such as mental health and considering them taboo. In this online survey-based study, the authors focused on examining whether yoga would alter individuals’ attitudes toward mental health. They hypothesized that 1) participants who regularly practiced yoga would be more familiar with the term mental health, 2) participants who practiced yoga would value their mental health more, and 3) participants who practiced yoga regularly would be more open about their mental health and be more likely to reach out for professional help if needed. They did not find a statistical significance for any of our hypotheses which suggests that yoga may not have an effect on perceptions of mental health in yoga-practicing Indian adults.

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Tree-Based Learning Algorithms to Classify ECG with Arrhythmias

Sun et al. | Apr 23, 2025

Tree-Based Learning Algorithms to Classify ECG with Arrhythmias

Arrhythmias vary in type and treatment, and ECGs are used to detect them, though human interpretation can be inconsistent. The researchers tested four tree-based algorithms (gradient boosting, random forest, decision tree, and extra trees) on ECG data from over 10,000 patients.

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The role minor and major snowfall events play in New Jersey snowfall over the past 126 years

Sharma et al. | Aug 11, 2022

The role minor and major snowfall events play in New Jersey snowfall over the past 126 years

Climate records indicate that there has been a trend of decreasing annual snowfall totals throughout the United States during the peak winter season. However, New Jersey has seen a significant increase in snowfall over the past 126 years of recorded observations. The authors hypothesize that although annual snowfall has remained the same on average, the frequencies of major and minor snowfall events have noticeably increased. They found that there was no significant evidence for an increase in the frequency of minor events (1.1-inch to 4.0-inch events), but there was evidence for an increase in the frequency of major events (4.1+ inch events). The results imply that a warming climate might be opening up opportunities for more snowfall.

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Machine Learning Algorithm Using Logistic Regression and an Artificial Neural Network (ANN) for Early Stage Detection of Parkinson’s Disease

Kar et al. | Oct 10, 2020

Machine Learning Algorithm Using Logistic Regression and an Artificial Neural Network (ANN) for Early Stage Detection of Parkinson’s Disease

Despite the prevalence of PD, diagnosing PD is expensive, requires specialized testing, and is often inaccurate. Moreover, diagnosis is often made late in the disease course when treatments are less effective. Using existing voice data from patients with PD and healthy controls, the authors created and trained two different algorithms: one using logistic regression and another employing an artificial neural network (ANN).

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