The authors investigated prophages present in Streptococcus bacteria that may increase their survival in different environments.
Read More...Distribution of prophages in the Streptococcus bacteria genus and their role in increasing host pathogenicity
The authors investigated prophages present in Streptococcus bacteria that may increase their survival in different environments.
Read More...Machine learning for the diagnosis of malaria: a pilot study of transfer learning techniques
The diagnosis of malaria remains one of the major hurdles to eradicating the disease, especially among poorer populations. Here, the authors use machine learning to improve the accuracy of deep learning algorithms that automate the diagnosis of malaria using images of blood smears from patients, which could make diagnosis easier and faster for many.
Read More...TNF signaling pathway upregulation as a potential pharmaceutical target for cocaine-addicted individuals
In this article, the authors investigate the RNA expression differences between groups of chronic cocaine abusers and drug-free subjects.
Read More...Assigning Lightning Seasons to Different Regions in the United States
Climate change is predicted to increase the frequency of severe thunderstorm events in coming years. In this study, the authors hypothesized that (i) the majority of severe thunderstorm events will occur in the summer months in all states examined for all years analyzed, (ii) climate change will cause an unusual number of severe thunderstorm events in winter months in all states, (iii) thundersnow would be observed in Colorado, and (iv.) there would be no difference in the number of severe thunderstorm events between states in any given year examined. They classified lightning seasons in all states observed, with the most severe thunderstorm events occurring in May, June, July, and August. Colorado, New Jersey, Washington, and West Virginia were found to have severe thunderstorm events in the winter, which could be explained by increased winter storms due to climate change (1). Overall, they highlight the importance of quantifying when lightning seasons occur to avoid lightning-related injuries or death.
Read More...The impact of genetic analysis on the early detection of colorectal cancer
Although the 5-year survival rate for colorectal cancer is below 10%, it increases to greater than 90% if it is diagnosed early. We hypothesized from our research that analyzing non-synonymous single nucleotide variants (SNVs) in a patient's exome sequence would be an indicator for high genetic risk of developing colorectal cancer.
Read More...Identification of a core set of model agnostic mRNA associated with nonalcoholic steatohepatitis (NASH)
In this study, the authors analyze gene expression datasets to determine if there is a core set of genes dysregulated during nonalcoholic steatohepatitis.
Read More...Expressional correlations between SERPINA6 and pancreatic ductal adenocarcinoma-linked genes
Pancreatic ductal adenocarcinoma (PDAC) is the most common form of pancreatic cancer, with early diagnosis and treatment challenges. When any of the genes KRAS, SMAD4, TP53, and BRCA2 are heavily mutated, they correlate with PDAC progression. Cellular stress, partly regulated by the gene SERPINA6, also correlates with PDAC progression. When SERPINA6 is highly expressed, corticosteroid-binding globulin inhibits the effect of the stress hormone cortisol. In this study, the authors explored whether there is an inverse correlation between the expression of SERPINA6 and PDAC-linked genes.
Read More...Using DNA Barcodes to Evaluate Ecosystem Health in the SWRCMS Reserve
Although the United States maintains millions of square kilometers of nature reserves to protect the biodiversity of the specimens living there, little is known about how confining these species within designated protected lands influences the genetic variation required for a healthy population. In this study, the authors sequenced genetic barcodes of insects from a recently established nature reserve, the Southwestern Riverside County Multi-Species Reserve (SWRCMSR), and a non-protected area, the Mt. San Jacinto College (MSJC) Menifee campus, to compare the genetic variation between the two populations. Their results demonstrated that the midge fly population from the SWRCMSR had fewer unique DNA barcode sequence changes than the MSJC population, indicating that the comparatively younger nature reserve's population had likely not yet established its own unique genetic drift changes.
Read More...Upregulation of the Ribosomal Pathway as a Potential Blood-Based Genetic Biomarker for Comorbid Major Depressive Disorder (MDD) and PTSD
Major Depressive Disorder (MDD), and Post-Traumatic Stress Disorder (PTSD) are two of the fastest growing comorbid diseases in the world. Using publicly available datasets from the National Institute for Biotechnology Information (NCBI), Ravi and Lee conducted a differential gene expression analysis using 184 blood samples from either control individuals or individuals with comorbid MDD and PTSD. As a result, the authors identified 253 highly differentially-expressed genes, with enrichment for proteins in the gene ontology group 'Ribosomal Pathway'. These genes may be used as blood-based biomarkers for susceptibility to MDD or PTSD, and to tailor treatments within a personalized medicine regime.
Read More...Gene expression profiling of MERS-CoV-London strain
In this study, the authors identify transcripts and gene networks that are changed after infection with the Middle East Respiratory Syndrome-related coronavirus (MERS-CoV).
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