Browse Articles

Impacts of the gut microbiota on arginine synthesis

Lane et al. | Aug 15, 2024

Impacts of the gut microbiota on arginine synthesis

In this article the authors looked at arginine synthesis across different bacteria commonly found in different regional diets. They found that B. megaterium and C. sporogenes both caused a higher pH to occur on their agar plates compared to other bacteria tested indicating a greater amount of arginine synthesis.

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An exploration of western mosquitofish as the animal component in an aquaponic farming system

Medina et al. | Dec 03, 2024

An exploration of western mosquitofish as the animal component in an aquaponic farming system
Image credit: The authors

Aquaponics (the combination of aquatic plant farming with fish production) is an innovative farming practice, but the fish that are typically used, like tilapia, are expensive and space-consuming to cultivate. Medina and Alvarez explore other options test if mosquitofish are a viable option in the aquaponic cultivation of herbs and microgreens.

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Optimizing data augmentation to improve machine learning accuracy on endemic frog calls

Anand et al. | Mar 09, 2025

Optimizing data augmentation to improve machine learning accuracy on endemic frog calls
Image credit: Anand and Sampath 2025

The mountain chain of the Western Ghats on the Indian peninsula, a UNESCO World Heritage site, is home to about 200 frog species, 89 of which are endemic. Distinctive to each frog species, their vocalizations can be used for species recognition. Manually surveying frogs at night during the rain in elephant and big cat forests is difficult, so being able to autonomously record ambient soundscapes and identify species is essential. An effective machine learning (ML) species classifier requires substantial training data from this area. The goal of this study was to assess data augmentation techniques on a dataset of frog vocalizations from this region, which has a minimal number of audio recordings per species. Consequently, enhancing an ML model’s performance with limited data is necessary. We analyzed the effects of four data augmentation techniques (Time Shifting, Noise Injection, Spectral Augmentation, and Test-Time Augmentation) individually and their combined effect on the frog vocalization data and the public environmental sounds dataset (ESC-50). The effect of combined data augmentation techniques improved the model's relative accuracy as the size of the dataset decreased. The combination of all four techniques improved the ML model’s classification accuracy on the frog calls dataset by 94%. This study established a data augmentation approach to maximize the classification accuracy with sparse data of frog call recordings, thereby creating a possibility to build a real-world automated field frog species identifier system. Such a system can significantly help in the conservation of frog species in this vital biodiversity hotspot.

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Specific Transcription Factors Distinguish Umbilical Cord Mesenchymal Stem Cells From Fibroblasts

Park et al. | Aug 16, 2019

Specific Transcription Factors Distinguish Umbilical Cord Mesenchymal Stem Cells From Fibroblasts

Stem cells are at the forefront of research in regenerative medicine and cell therapy. Two essential properties of stem cells are self-renewal and potency, having the ability to specialize into different types of cells. Here, Park and Jeong took advantage of previously identified stem cell transcription factors associated with potency to differentiate umbilical cord mesenchymal stem cells (US-MSCs) from morphologically similar fibroblasts. Western blot analysis of the transcription factors Klf4, Nanog, and Sox2 revealed their expression was unique to US-MSCs providing insight for future methods of differentiating between these cell lines.

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Using DNA Barcodes to Evaluate Ecosystem Health in the SWRCMS Reserve

Horton et al. | Sep 27, 2018

Using DNA Barcodes to Evaluate Ecosystem Health in the SWRCMS Reserve

Although the United States maintains millions of square kilometers of nature reserves to protect the biodiversity of the specimens living there, little is known about how confining these species within designated protected lands influences the genetic variation required for a healthy population. In this study, the authors sequenced genetic barcodes of insects from a recently established nature reserve, the Southwestern Riverside County Multi-Species Reserve (SWRCMSR), and a non-protected area, the Mt. San Jacinto College (MSJC) Menifee campus, to compare the genetic variation between the two populations. Their results demonstrated that the midge fly population from the SWRCMSR had fewer unique DNA barcode sequence changes than the MSJC population, indicating that the comparatively younger nature reserve's population had likely not yet established its own unique genetic drift changes.

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Evaluating machine learning algorithms to classify forest tree species through satellite imagery

Gupta et al. | Mar 18, 2023

Evaluating machine learning algorithms to classify forest tree species through satellite imagery
Image credit: Sergei A

Here, seeking to identify an optimal method to classify tree species through remote sensing, the authors used a few machine learning algorithms to classify forest tree species through multispectral satellite imagery. They found the Random Forest algorithm to most accurately classify tree species, with the potential to improve model training and inference based on the inclusion of other tree properties.

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